1. Power supply : It is not necessary to spin up all the hard disks immediately on boot. Not sure how to do that in windows, but using linux, I have successfully set up a server which spins up drives only when accessed. Useful to limit the total power consumption in multi-disk scenarios on boot - up time. On windows too, this should be possible. Keep that in mind when thinking of upgrading power supply.
2. Motherboard : E-350 (e.g. ASUS - Motherboards- ASUS E35M1-I) should be much better than Atom. Even if you don't use its graphics features. Atom's platform's I/O performance is horrible - last I tried about 1.5 years ago, it gave a pathetic 15-16 MB/s read speed even on a WD 640GB hard disk, capable of at least 60 MB/s. Power consumption would be eclipsed by the disks' power consumption anyway, and idle power consumption of AMD is not too bad either, though Atom is king in that aspect.
Intel is very miserly at SATA ports - Atom platforms give 2 SATA 3gbps ports, 2 more are added by gigabyte in the motherboard you are listing. Compare with 6 AMD SATA 6gbps ports on the E35M1, and it is a no-contest. Assuming you keep this setup for 3+ years, regular hard disks should start saturating SATA 3gbps easily in a few years time. SATA controllers other than Intel / AMD 's have horrible reputation in standard compliance , flakiness and performance. Not sure of this particular gigabyte controller. This also supports 8 GB RAM - something you might appreciate when upgrading to higher capacity.
3. Running power : SATA standard supports spin-down of idle hard disks too. You can use it to lower your overall power consumption, though this feature is different from the startup power consumption which has to be enabled separately.
2. Motherboard : E-350 (e.g. ASUS - Motherboards- ASUS E35M1-I) should be much better than Atom. Even if you don't use its graphics features. Atom's platform's I/O performance is horrible - last I tried about 1.5 years ago, it gave a pathetic 15-16 MB/s read speed even on a WD 640GB hard disk, capable of at least 60 MB/s. Power consumption would be eclipsed by the disks' power consumption anyway, and idle power consumption of AMD is not too bad either, though Atom is king in that aspect.
Intel is very miserly at SATA ports - Atom platforms give 2 SATA 3gbps ports, 2 more are added by gigabyte in the motherboard you are listing. Compare with 6 AMD SATA 6gbps ports on the E35M1, and it is a no-contest. Assuming you keep this setup for 3+ years, regular hard disks should start saturating SATA 3gbps easily in a few years time. SATA controllers other than Intel / AMD 's have horrible reputation in standard compliance , flakiness and performance. Not sure of this particular gigabyte controller. This also supports 8 GB RAM - something you might appreciate when upgrading to higher capacity.
3. Running power : SATA standard supports spin-down of idle hard disks too. You can use it to lower your overall power consumption, though this feature is different from the startup power consumption which has to be enabled separately.